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Jose Miranda

PhD Student

Jose Miranda

2022 - Present

PhD student developing machine learning methods for operational oceanography in the Gulf of Mexico.

Research areas

  • Computer Vision
  • Deep Learning
  • Ocean
  • SciML

Biography

José Roberto Miranda is a Ph.D. student in Computational Science at Florida State University. His work sits at the intersection of oceanography and scientific machine learning, with a focus on reconstructing and assimilating ocean fields from sparse observations and remote sensing.

Research

José develops deep learning methods for operational oceanography, especially temperature and salinity reconstruction in the Gulf of Mexico. He is author of NeSPReSO (Neural Synthetic Profiles from Remote Sensing and Observations), published in Ocean Modelling (2025), which reconstructs thermohaline fields from satellite and in situ data and includes a public web interface and API. He also co-authored work on convolutional neural networks for sea surface data assimilation in operational ocean models (Ocean Science, 2025) and contributed to reconstructing 4D thermohaline fields from Argo floats using geostrophic stream-function projections (EGU 2025).

His research connects scientific computing with real-world ocean observing systems and has involved collaborations with COAPS/FSU, CICESE, and the Naval Research Laboratory.

Background

José holds a B.S. in Oceanography from Universidade Federal de Santa Catarina (2008–2013) and an M.S. in Computational Science from Florida State University (conferred May 2026). Before graduate school in the U.S., he spent nearly a decade as an oceanographer and surveyor with companies including Van Oord, HM Coastal, SPECTRAH, and Chicago Bridge & Iron, working on hydrographic and topographic surveys, dredging-related environmental consulting, and technical reporting. That field experience shapes his approach to computational oceanography: he brings operational domain knowledge to machine learning for ocean prediction and monitoring.

He has presented work at the Ocean Sciences Meeting (2024, 2026), the UGOS Annual Meeting at Woods Hole (2025), and the FSU Scientific Computing AI Seminar (2026). He is a member of AGU.

Beyond research

Outside research, José has applied machine learning in regulatory and analytical settings as an OPS Researcher with the Florida Gaming Control Commission. He previously founded Fractal Sustainable Solutions and worked as an environmental auditor with Fundação Universidade de São Paulo.

Education

3 items

Florida State University

Ph.D. in Computational Science

2022 - Present

Machine Learning Applications in Oceanography

Florida State University

M.S. in Computational Science

2022 - 2026

Universidade Federal de Santa Catarina

B.S. in Oceanography

2008 - 2013

Projects

1 item

Publications

2 items
Journal 2025 Convolutional Neural Networks for Sea Surface Data Assimilation in Operational Ocean Models - Gulf of Mexico Test Case Olmo Zavala-Romero Alexandra Bozec Eric P. Chassignet Jose Miranda

In the lab Olmo Zavala-Romero Jose Miranda

. Deep learning models have demonstrated remarkable success in fields such as language processing and computer vision, routinely employed for tasks like language translation, image classification, and anomaly detection. Recent advancements in ocean sciences, particularly in data assimilation (DA), suggest that machine learning can emulate dynamical models, replace traditional DA steps to expedite processes, or serve as hybrid surrogate models to enhance forecasts. However, these studies often rely on ocean models of intermediate complexity, which involve significant simplifications that present challenges when transitioning to full-scale operational ocean models. This work explores the application of convolutional neural networks (CNNs) in data assimilation within the context of the HYbrid Coordinate Ocean Model (HYCOM) in the Gulf of Mexico. The CNNs are trained to correct model errors from a 2-year, highresolution (1/25°) HYCOM dataset, assimilated using the Tendral Statistical Interpolation System (T-SIS). The CNNs are trained to replicate the increments generated by the TSIS data assimilation package, aiming to correct model forecasts of sea surface temperature (SST) and sea surface height (SSH). The inputs to the CNNs include real satellite observations of SST from the Group for High Resolution Sea Surface Temperature (GHRSST), along-track altimeter SSH observations (ADT), the model background state (previous forecast), and the innovations (differences between observations and background). We assess the performance of the CNNs across five controlled experiments, designed to provide insights into their application in environments governed by full primitive equations, real observations, and complex topographies. The experiments focus on evaluating (1) the architecture and complexity of the CNNs, (2) the type and quantity of observations, (3) the type and number of assimilated fields, (4) the impact of training window size, and (5) the influence of coastal boundaries. Our findings reveal significant correlations between the chosen training window size – a factor not commonly examined – and the CNNs’ ability to assimilate observations effectively. We also establish a clear link between the CNNs’ architecture and complexity and their overall performance. This research uses artificial intelligence to enhance ocean forecasting in the Gulf of Mexico. By using convolutional neural networks, the study improves predictions of sea temperatures and heights by integrating real satellite data with existing models. Through five comprehensive experiments, the team found that the amount of training data and the design of the neural networks significantly affect accuracy. These insights pave the way for faster, more reliable ocean models, benefiting environmental monitoring and maritime operations. 1

Journal 2025 Neural Synthetic Profiles from Remote Sensing and Observations NeSPReSO - Reconstructing Temperature and Salinity Fields in the Gulf of Mexico Jose Miranda Olmo Zavala-Romero Luna Hiron Eric P. Chassignet Bulusu Subrahmanyam Thomas Meunier Robert W. Helber Enric Pallas-Sanz Miguel Tenreiro

In the lab Jose Miranda Olmo Zavala-Romero

Accurate circulation modeling in the Gulf of Mexico (GoM) is hampered by the limited availability of insitu subsurface data, leading to inaccuracies in subsurface representations. These inaccuracies diminish the reliability of ocean models and constrain the duration of dependable forecasts. This study introduces NeSPReSO (Neural Synthetic Profiles from Remote Sensing and Observations), a data-driven method to efficiently and accurately estimate subsurface temperature and salinity profiles using satellite-derived surface data. This provides an alternative to conventional synthetic data generation techniques. Principal Component Analysis (PCA) is applied to extract the main features of temperature and salinity profiles of an Argo dataset. Then, a neural network is trained to predict these principal features using inputs such as time, location, and satellite-derived absolute dynamic topography alongside sea surface temperature and salinity. The model, evaluated using additional Argo profiles and glider data collected in the Gulf of Mexico, over-performs other traditional synthetic data generation methods, such as the Gravest Empirical Modes (GEM), Multiple Linear Regression (MLR) and Improved Synthetic Ocean Profile (ISOP), in terms of root mean square error and bias. Our findings indicate that our method effectively captures the main variations of subsurface fields, and that synthetic profiles generated by the model align well with actual observations, accurately capturing key features such as thermoclines, haloclines, and temperature-salinity structure of the region. This new method will be implemented in GoM data assimilative models and is expected to improve the accuracy of modeled subsurface currents.

Blog

1 post
Research Mar 15, 2026 FSU Students Present Machine Learning Oceanography Research at Ocean Sciences Meeting 2026 in Glasgow

Students Jose Miranda /team/Jose Miranda/ and Jorge Velasco /team/Jorge Velasco/ represented Florida State University's Department of Scientific Computing and the Center for Ocean

By Jose Miranda, Jorge Velasco

  • Deep Learning
  • Ocean
  • SciML
Read the post