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PULSE Lab

Projects

Research programs that move from data to impact.

Current and completed work across oceanography and health, with the collaborators and funding behind each program.

Current work

Active research lines

Current 2026–Present

A Multi-Agent System for Ocean Data Analysis and Knowledge Generation

Goals

Make NOAA ocean observations easier to use and to review by building an AI-assisted system that turns plain-language questions into documented analyses, maps and summaries. The pilot focuses on ERDDAP data services and starts with Argo float observations distributed through NOAA's Observing System Monitoring Center and regional observations from GCOOS, the coastal ocean observing system for the Gulf. It targets questions about ocean temperature, salinity, sampling coverage, recent conditions in the Gulf, and data gaps.

Methods

An orchestrator agent interprets each question, plans the analysis and assigns tasks to three specialised agents: a data-access agent that finds datasets and builds ERDDAP queries, an analysis agent that computes statistics, trends and diagnostics in Python, and a visualization agent that produces maps, time series and profiles. Shared services keep a task and provenance log, a data catalogue, quality-control rules and a sandboxed execution environment, so each answer reports its data sources, dates and locations, quality checks, results and limitations. The team will also build reusable Argo and Gulf workflows, benchmark tests, documentation, and guidance for transitioning the tools to NOAA use.

Key findings

The pilot began in 2026 as one of eight projects funded by NOAA's Global Ocean Monitoring and Observing Program through its FY26 AI and Data Management pilots. Findings will be added here as the work progresses.

Current 2024–Present

AI-Enhanced Operational Ocean Forecasting in the Gulf of Mexico

Goals

Improve the accuracy, efficiency, and utility of operational ocean forecasts in the Gulf of Mexico by integrating machine learning into core modeling workflows. This research line targets three bottlenecks in operational prediction: vertical mixing parameterizations, data assimilation of satellite observations, and reconstruction of subsurface fields and mesoscale eddy processes when in-situ data are sparse.

Methods

We combine physics-based ocean models with deep learning across complementary pathways. Neural networks augment the K-Profile Parameterization (KPP-DNN) in GOTM to improve vertical mixing estimates. Convolutional neural networks accelerate and enhance sea surface data assimilation in operational Gulf of Mexico model configurations. NeSPReSO uses satellite surface observations and PCA-based neural networks to generate synthetic temperature and salinity profiles for data-sparse regions. Separately, machine learning models fuse altimetry, SST, and chlorophyll-a to identify and predict Lagrangian coherent eddies that control tracer transport in the Gulf.

Key findings

KPP-DNN improves turbulent mixing estimates in GOTM relative to conventional KPP, providing a learned correction pathway for vertical physics in column models. CNN-based sea surface assimilation demonstrates that deep learning can be applied to operational-scale ocean models, not only simplified test cases. NeSPReSO reconstructs subsurface T/S profiles from satellite data, addressing a key constraint on forecast reliability in the Gulf of Mexico. ML eddy identification links satellite fields to Lagrangian coherent structures relevant to oil transport, Loop Current dynamics, and mesoscale monitoring — connecting process studies to operational observability.

Current 2021–2024

Marine Litter Tracking and Hotspot Mapping in the Global Ocean and Caribbean

Goals

Quantify where mismanaged plastic waste released into the ocean travels, where it accumulates on coastlines, and how those pathways and hotspots evolve across global and regional scales. This research line connects country-level plastic sources to downstream beaching and offshore accumulation, with a focus on the Wider Caribbean Region (WCR), one of the most plastic-concentrated areas in the world's oceans.

Methods

We use Lagrangian particle tracking embedded in a global ocean circulation model to simulate the transport of mismanaged plastic waste (MPW) from river and coastal release points. The framework builds on worldwide MPW inventories and tracks particles forward in time to estimate destination countries and coastline sources. For the Caribbean extension, we seed plastics across the WCR, identify accumulation hotspots, and analyze seasonal variability driven by surface currents, winds, and beaching criteria. Results are compared against available observations and published litter datasets where possible.

Key findings

The 2021 global study showed that countries far apart are connected through a complex web of ocean pathways, enabling quantitative answers to where litter from a given country goes and where litter washing onto a given coastline originates. The modeled distribution agrees with limited observations and prior studies, and the results are available through an interactive atlas (marinelitter.fsu.edu). The 2024 Caribbean study found that most plastic converges quickly onto coastlines under strong surface currents and easterly winds, with major hotspots along western Central America, Mexico, Texas, Haiti, the Dominican Republic, and Venezuela. Hotspot intensity varies seasonally with circulation and wind patterns, while accumulation near Haiti, the Dominican Republic, and Venezuela is strongly tied to nearby MPW sources.

Current 2018–Present

AI-Driven Air Pollution Forecasting and Early Warning Systems

Goals

Improve operational air quality forecasting in densely populated urban areas so government authorities can issue timely alerts and reduce exposure of vulnerable populations during pollution episodes. This research line focuses on machine learning frameworks that integrate historical monitoring-network data, regional meteorological forecasts, and real-time atmospheric observations to predict ozone and related pollutants hours to days in advance.

Methods

We develop neural-network forecasting systems trained on long-term governmental air quality and atmospheric monitoring records, combined with meteorological reanalysis and forecast fields from regional Weather Research and Forecasting (WRF) implementations. Input features include cyclical time encodings (day of week, hour, day of year), data augmentation strategies, and multi-station architectures for simultaneous predictions across monitoring networks. Trained models ingest real-time station data and regional weather forecasts to produce 1–24 hour ozone forecasts, evaluated against held-out observations using mean absolute error and index of agreement metrics. Systems are deployed operationally through web interfaces for public and regulatory use.

Key findings

The 2025 Mexico City operational ozone forecasting system (Atmospheric Environment; doi:10.1016/j.atmosenv.2024.121017) achieved a mean absolute error of 9.81 ppb and an index of agreement of 0.91 across all stations; for the top 10 stations, MAE fell below 8.7 ppb and agreement exceeded 0.93. Integrating WRF meteorological forecasts and cyclical time features improved prediction skill over baselines, and performance is comparable to ML forecasting systems in other major metropolitan areas while representing an improvement over prior Mexico City operational systems. The pilot system is live at https://aire.atmosfera.unam.mx/.

Current 2016–Present

Deep Learning and Radiomics for Medical Imaging in Oncology and Radiotherapy

Goals

Develop and validate machine learning and deep learning methods that extract quantitative information from clinical MRI and fMRI to support cancer diagnosis, risk stratification, and adaptive radiotherapy. This research line spans prostate multiparametric MRI (mpMRI)—from lesion classification and zonal segmentation to integration with clinical-genomic risk models—and extends to MRI-guided radiotherapy workflows for cervical, pancreatic, and glioblastoma patients, plus resting-state fMRI studies of brain network connectivity.

Methods

We apply radiomics and machine learning to multiparametric prostate MRI for clinically significant lesion classification (PROSTATEx challenge framework) and multi-vendor prostate and peripheral zone segmentation using 3D multistream convolutional neural networks. For adaptive radiotherapy, we develop automated pipelines for gross tumor volume (GTV) and organ-at-risk (OAR) delineation on daily and per-fraction MRI, AI-based abdominal anatomy segmentation in pancreatic adaptive RT, multi-reference tissue normalization on T2-weighted MRI, and automated volume delineation in glioblastoma. Complementary resting-state fMRI connectivity analysis characterizes network changes in nicotine-dependent patients.

Key findings

Published across eight journal and conference papers (2016–2023), this line delivered vendor-robust prostate and peripheral-zone segmentation on 550+ MRIs, radiomics classifiers for clinically significant lesions linked to NCCN and Decipher risk stratification, and deep learning pipelines that automate contouring in adaptive radiotherapy for cervical, pancreatic, and glioblastoma patients. The work was carried out in collaboration with the University of Miami radiation oncology and radiomics groups and established foundational expertise in volumetric MRI analysis now extended to other biomedical imaging at the lab.

Current 2010–Present

Interactive Scientific Visualization for Climate and Ocean Data

Goals

Develop open, accessible tools for exploring and communicating complex geospatial and four-dimensional environmental datasets. This research line connects climate atlases, self-contained Web GIS platforms, and interactive map interfaces so scientists, educators, and decision-makers can analyze, compare, and share continental, oceanic, bioclimatic, and socioeconomic information through the web.

Methods

The line began with the Digital Climatic Atlas of Mexico (DCAM), which integrated GIS, WMS map servers, interactive digital cartography, and high-resolution georeferenced layers for Mexico and Central America. It evolved into OWGIS, an open-source Java application that auto-generates self-contained Web GIS sites from XML configuration and serves data through OGC standards from GeoServer and ncWMS/NetCDF backends. OWGIS 2.0 extended the platform with HTML5 mobile interfaces and COMPASS-based styling for desktop and field use. Current work applies these visualization principles to ocean circulation, marine litter pathways, and ML-driven environmental datasets in the PULSE Lab.

Key findings

The 2010 Digital Atlas of Mexico (Eos; doi:10.1029/2010eo140001) showed that online multimedia cartography can make climate, bioclimatic, and socioeconomic information readily accessible through preconfigured and user-configured georeferenced maps. OWGIS (Environmental Modelling & Software, 2014; doi:10.1016/j.envsoft.2014.08.029) demonstrated that XML-configured Web GIS sites can publish 4D NetCDF environmental data with animations, vertical profiles, transects, and downloads—powering DCAM (>2000 layers) and Deep-C Gulf of Mexico displays. OWGIS 2.0 (2014) added responsive HTML5 mobile interfaces while retaining desktop visualization for classroom and field applications.

Past work

Completed projects

No completed projects to display.

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